The study aimed to establish an HPLC-QAMS method for simultaneous quantitation of nine effective components in Polygonum Multiflorum Fangtuoyufa Jinghuaye, and to verify the feasibility and accuracy of the method. Quercitrin was used as the reference substance and methanol-0.1% phosphoric acid was used as the mobile phase. The contents of emodin, physcion, myricitrin, quercitrin, myricetin, quercetin, kaempferol, amentoflavone and hinokiflavone in 12 batches of Polygonum Multiflorum Fangtuoyufa Jinghuaye were determined by external standard method and HPLC-QAMS method, respectively, and the difference between the results of the two methods was compared to verify the serviceability of HPLC-QAMS method. The results show that the linear ranges of the nine components are good, the correlation coefficients are greater than 0.999, the limits of detection (LOD) are 0.027-0.151 µg/mL, and the limits of quantification are 0.076-0.449 µg/mL. The relative correlation factors are 0.753 7, 0.836 9, 1.019 2, 2.991 3, 1.687 5, 2.236 9, 1.096 3 and 1.249 3 for emodin, physcion, myricitrin, myricetin, quercetin, kaempferol, amentoflavone and hinokiflayone, respectively. There is no significant difference in the content of 9 components in Polygonum Multiflorum Fangtuoyufa Jinghuaye determined by the two methods (P>0.05). The relative correlation factors established with quercitrin as the internal reference substance have good reproducibility. The HPLC-QAMS method can be used for the quality evaluation of nine effective components in Polygonum Multiflorum Fangtuoyufa Jinghuaye.